PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g18540
Common NameRKNIF2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 554aa    MW: 60191.5 Da    PI: 7.3563
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g18540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30297355259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  CA02g18540 297 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 355
                 7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33281357IPR003657WRKY domain
SuperFamilySSF1182907.06E-28289357IPR003657WRKY domain
PROSITE profilePS5081129.562291357IPR003657WRKY domain
SMARTSM007741.8E-36296356IPR003657WRKY domain
PfamPF031061.3E-26298355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDKGWGLTLE SSSSSDKVGF FMNKPVFGFN LSPRLNPAEM FPSSDDKRAI VNEVDFFSEK  60
KPIVKKENSQ GDRTDQCVVN TGLQLVIANA GSDQSTVDDG ISSELVLEDK RAKIQLAQLQ  120
VELQRMNSEN QRLKGMLTQV NNSYSALQMH LVTLMQQQQQ QQQQQQMISR TESTHAHEVV  180
EAKFNDEKKQ EKEGTIVPRQ FMELGPSGSK ADPLDEPSNS HTSSEERTLS GSPRNNMELL  240
SRDKAIGREE SPESESWAPN KVPKLMNSSK PVEQPTEATM RKARVSVRAR SEAPMISDGC  300
QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRCAED RTILITTYEG THNHPLPPAA  360
MAMASTTSAA ANMLLSGSMP SADGLMNTNF LARAMLPCSS NMATISASAP FPTVTLDLTA  420
QNSNAALPNY HQRVNHANNA QFQFPLPAGL NHPNFIASMS APQMPQVLGQ AMYNQSKFSG  480
LQVSQDNIHH PSISHDTLSA ATAAITADPN FTAALAAAIS SIIGCGSHPN NNGNSTMSGP  540
SSNNNNTSSF PGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22283359176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2533670.0GQ253367.1 Capsicum annuum transcription factor WRKY (RKNIF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560151.10.0PREDICTED: probable WRKY transcription factor 31 isoform X2
SwissprotQ9C5191e-159WRKY6_ARATH; WRKY transcription factor 6
TrEMBLC7E5X80.0C7E5X8_CAPAN; Transcription factor WRKY
STRINGPGSC0003DMT4000424000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-137WRKY family protein